Datasets

SPECIES
TECHNOLOGY
ORGAN
DISEASE
DIMENSION
MOLECULE
CELL TYPE
Human
Brain
Glioblastoma
3.09K
Cells
37
Markers
1
ROI
IMC
2D
Protein
NATURE COMMS, 2022
Human
Breast
Breast Cancer
1.12M
Cells
39
Markers
794
ROIs
IMC
2D
Protein
Cell Type
NATURE GENETICS, 2022
Human
Skin
Melanoma
864K
Cells
41
Markers
166
ROIs
IMC
2D
Protein & RNA
SCIENCE IMMUNOLOGY, 2022
Human
Skin
Melanoma
989K
Cells
46
Markers
167
ROIs
IMC
2D
Protein
SCIENCE IMMUNOLOGY, 2022
Human
Breast
Breast Cancer (Ductal carcinoma in situ)
69.5K
Cells
44
Markers
79
ROIs
MIBI
2D
Protein
Cell Type
CELL, 2022
Human
Mixed
Cancer
345K
Cells
15
Markers
165
ROIs
MIBI
2D
Protein
Cell Type
LABORATORY INVESTIGATION, 2022
Zebra Fish
Embryo
Normal
13K
Cells
10.2K
Genes
6
ROIs
Stereo-seq
2D
RNA
Cell Type
DEVELOPMENTAL CELL, 2022
Arabidopsis Leaves
Plant
Normal
16.3K
Cells
17.4K
Genes
26
ROIs
Stereo-seq
2D
RNA
Cell Type
DEVELOPMENTAL CELL, 2022
Fruit Fly
Embryo
Normal
47.7K
Cells
12.6K
Genes
3
ROIs
Stereo-seq
3D
RNA
Cell Type
DEVELOPMENTAL CELL, 2022
Mouse
Stomach
Gastric Cancer
2.43K
Spots
16K
Genes
1
ROI
Visium
2D
RNA
CANCER SCIENCE, 2022
Mouse
Liver
Obesity
17.3K
Spots
17.9K
Genes
10
ROIs
Visium
2D
RNA
Cell Type
CELL, 2022
Human
Liver
Obesity
6.89K
Spots
18.7K
Genes
5
ROIs
Visium
2D
RNA
Cell Type
CELL, 2022
Mouse
Lung
Lung Cancer
7.63K
Spots
18.4K
Genes
4
ROIs
Visium
2D
RNA
CELL, 2022
Human
Brain
Glioblastoma
2.23K
Spots
6.2K
Genes
3
ROIs
Visium
2D
RNA
NATURE COMMS, 2022
Mouse
Brain
Normal
30.6K
Spots
18.9K
Genes
8
ROIs
Visium
2D
RNA
NATURE NEUROSCIENCE, 2022
Human
Lung
Normal
2.22K
Spots
19.2K
Genes
2
ROIs
Visium
2D
RNA
NATURE, 2022
Mouse
Embryo
Normal
521K
Cells
23.8K
Genes
8
ROIs
Stereo-seq
2D
RNA
Cell Type
CELL, 2022
Mouse
Colon
Normal
7.48K
Spots
16.9K
Genes
2
ROIs
Visium
2D
RNA
NATURE COMMS, 2022
Mouse
Brain-Cortex
Normal
26.1K
Cells
234
Genes
2
ROIs
MERFISH
2D
RNA
Cell Type
SCIENCE, 2022
Human
Brain-Cortex
Normal
44.3K
Cells
4K
Genes
10
ROIs
MERFISH
2D
RNA
Cell Type
SCIENCE, 2022
Human
Brain-Cortex
Normal
56.9K
Cells
250
Genes
5
ROIs
MERFISH
2D
RNA
Cell Type
SCIENCE, 2022
Mouse
Liver
Acute Injury
17.4K
Spots
17.6K
Genes
6
ROIs
Visium
2D
RNA
CELL STEM CELL, 2022
Mouse
Lung
Lung Cancer
7.63K
Spots
18.4K
Genes
4
ROIs
Visium
2D
RNA
CELL, 2022
Human
Lung
Normal
2.22K
Spots
19.2K
Genes
2
ROIs
Visium
2D
RNA
NATURE, 2022
Human
Tonsil
Normal
2.49K
Spots
24.8K
Genes
1
ROI
spatial-ATAC-seq
2D
RNA
NATURE, 2022
Mouse
Brain
Normal
2.5K
Spots
24K
Genes
1
ROI
spatial-ATAC-seq
2D
RNA
NATURE, 2022
Mouse
Embryo
Normal
4.44K
Spots
24K
Genes
2
ROIs
spatial-ATAC-seq
2D
RNA
NATURE, 2022
Human
Bladder
Bladder Cancer (Muscle-invasive bladder cancer)
598K
Cells
12
Markers
75
ROIs
CODEX
2D
Protein
Cell Type
NATURE COMMS, 2021
Human
Tonsil
Normal
192K
Cells
41
Markers
1
ROI
CODEX
2D
Protein
NATURE PROTOCOLS, 2021
Human
Organoid-Kidney
Normal
1.36K
Spots
14.4K
Genes
3
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Human
Eye
Conjunctival Melanoma
2.1K
Cells
17
Markers
2
ROIs
IMC
2D
Protein
BMC OPHTHALMOLOGY, 2021
Mouse
Lung
Lung Cancer
285K
Cells
26
Markers
12
ROIs
IMC
2D
Protein
NATURE COMMS, 2021
Human
Lung
COVID-19
664K
Cells
36
Markers
237
ROIs
IMC
2D
Protein
Cell Type
NATURE, 2021
Human
Breast
Breast Cancer
108K
Cells
25
Markers
1
ROI
IMC
3D
Protein
Cell Type
NATURE CANCER, 2021
Human
Lung
COVID-19
1.51K
Spots
15.9K
Genes
2
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Human
Breast
Breast Cancer
13.8K
Cells
32
Markers
1
ROI
IMC
3D
Protein
NATURE CANCER, 2021
Human
Breast
Breast Cancer
6.46K
Cells
28
Markers
1
ROI
IMC
3D
Protein
NATURE CANCER, 2021
Human
Breast
Breast Cancer
81.2K
Cells
24
Markers
1
ROI
IMC
3D
Protein
NATURE CANCER, 2021
Mouse
Brain-Motor Cortex
Normal
274K
Cells
254
Genes
64
ROIs
MERFISH
2D
RNA
Cell Type
NATURE, 2021
Human
Muscle
Soft tissue sarcomas
15.2K
Spots
20.8K
Genes
4
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Human
Breast
Breast Cancer (Triple Negative Breast Cancer)
190K
Cells
35
Markers
38
ROIs
MIBI
2D
Protein
Cell Type
COMMS BIOLOGY, 2021
Mouse
Embryo
Normal
122K
Cells
33.5K
Genes
14
ROIs
sci-Space
2D
RNA
Cell Type
SCIENCE, 2021
Mouse
Liver
Normal
21K
Cells
16.9K
Genes
6
ROIs
seq-scope
2D
RNA
Cell Type
CELL, 2021
Mouse
Colon
Normal
28.4K
Cells
18.2K
Genes
11
ROIs
seq-scope
2D
RNA
Cell Type
CELL, 2021
Mouse
Embryo
Normal
57.5K
Cells
351
Genes
182
ROIs
seqFISH
2D
RNA
NATURE BIOTECHNOLOGY, 2021
Human
Intestine
Ovarian carcinosarcoma (Metastasis to omentum)
16.2K
Spots
20.6K
Genes
4
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Human
Organoid-Lung
Normal
1.83K
Spots
14.4K
Genes
4
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Mouse
Brain
Normal
18.4K
Spots
18.3K
Genes
7
ROIs
Visium
2D
RNA
CELL GENOMICS, 2021
Human
Skin
Obesity
41.8K
Spots
19K
Genes
15
ROIs
Visium
2D
RNA
CELL METABOLISM, 2021
Mouse
Colon-Intestine
Normal
9.33K
Spots
20.6K
Genes
8
ROIs
Visium
2D
RNA
CELL, 2021
Human
Breast
Breast Cancer
13.8K
Spots
34K
Genes
12
ROIs
Visium
2D
RNA
COMMS BIOLOGY, 2021
Human
Liver
Normal
2.27K
Spots
15.8K
Genes
1
ROI
Visium
2D
RNA
HEPATOLOGY COMMUNICATIONS, 2021
Human
Kidney
Kidney Injury
3.01K
Spots
18.2K
Genes
1
ROI
Visium
2D
RNA
JCI INSIGHT, 2021
Mouse
Kidney
Kidney Injury
5.79K
Spots
17.8K
Genes
3
ROIs
Visium
2D
RNA
JCI INSIGHT, 2021
Mouse
Kidney
Kidney Injury
9.54K
Spots
17.9K
Genes
5
ROIs
Visium
2D
RNA
JASN, 2021
Human
Skin
Squamous cell carcinoma
10.4K
Spots
19.9K
Genes
4
ROIs
Visium
2D
RNA
NATURE BIOTECHNOLOGY, 2021
Human
Intestine-Ileum
Normal
13.1K
Spots
20.3K
Genes
4
ROIs
Visium
2D
RNA
NATURE BIOTECHNOLOGY, 2021
Human
Breast
Breast Cancer (HER2-positive breast cancer)
13.6K
Spots
17K
Genes
36
ROIs
Visium
2D
RNA
NATURE COMMS, 2021
Mouse
Brain-Postnatal Brain
Normal
3.02K
Spots
18.3K
Genes
1
ROI
Visium
2D
RNA
NATURE COMMS, 2021
Zebra Fish
Whole Body (Transverse)
Normal
7.28K
Spots
18.3K
Genes
3
ROIs
Visium
2D
RNA
NATURE COMMS, 2021
Human
Kidney
Normal
790
Spots
14.6K
Genes
4
ROIs
Visium
2D
RNA
NATURE COMMS, 2021
Mouse
Liver
Normal
8.75K
Spots
9.65K
Genes
12
ROIs
Visium
2D
RNA
NATURE COMMS, 2021
Human
Breast
Breast Cancer
15.6K
Spots
22.8K
Genes
6
ROIs
Visium
2D
RNA
Cell Type
NATURE GENETICS, 2021
Human
Organoid
Normal
2.04K
Spots
19.2K
Genes
3
ROIs
Visium
2D
RNA
Cell Type
NATURE METHODS, 2021
Mouse
Brain
Inflammatory
15.7K
Spots
21.3K
Genes
6
ROIs
Visium
2D
RNA
NATURE NEUROSCIENCE, 2021
Human
Brain-Dorsolateral prefrontal cortex
Normal
47.7K
Spots
22.4K
Genes
12
ROIs
Visium
2D
RNA
Cell Type
NATURE NEUROSCIENCE, 2021
Mouse
Brain
Cancer
6.42K
Spots
36.2K
Genes
4
ROIs
Visium
2D
RNA
NATURE, 2021
Mouse
Bone
Normal
1.67K
Spots
16.9K
Genes
4
ROIs
Visium
2D
RNA
PNAS, 2021
Human
Colon
Colorectal Cancer
258K
Cells
57
Markers
140
ROIs
CODEX
2D
Protein
Cell Type
CELL, 2020
Human
Colon
Colon Cancer
1.93M
Cells
8
Markers
3
ROIs
CyCIF
2D
Protein
NATURE CELL BIOLOGY, 2020
Mouse
Embryo
Normal
24.8K
Spots
23.2K
Genes
15
ROIs
DBiT-seq
2D
RNA
CELL, 2020
Human
Breast
Breast Cancer
480K
Cells
37
Markers
548
ROIs
IMC
2D
Protein
Cell Type
NATURE CANCER, 2020
Human
Breast
Breast Cancer
433K
Cells
35
Markers
365
ROIs
IMC
2D
Protein
Cell Type
NATURE, 2020
Human
Breast
Breast Cancer
856K
Cells
33
Markers
381
ROIs
IMC
2D
Protein
Cell Type
NATURE, 2020
Human
Colon
Colon Cancer
63.7K
Cells
35
Markers
4
ROIs
MIBI
2D
Protein
Cell Type
NATURE BIOTECHNOLOGY, 2020
Mouse
Brain
Alzheimer
10.3K
Spots
40.8K
Genes
20
ROIs
Visium
2D
RNA
Cell Type
CELL, 2020
Human
Skin
Squamous Cell Carcinoma
8.67K
Spots
17.3K
Genes
12
ROIs
Visium
2D
RNA
CELL, 2020
Mouse
Brain-Hippocampus
Alzheimer
15.1K
Spots
22.7K
Genes
24
ROIs
Visium
2D
RNA
Cell Type
ISCIENCE, 2020
Mouse
Brain-Olfactory Bulb
Alzheimer
5.06K
Spots
20.5K
Genes
24
ROIs
Visium
2D
RNA
Cell Type
ISCIENCE, 2020
Human
Breast
Breast Cancer
30.6K
Spots
21.5K
Genes
68
ROIs
Visium
2D
RNA
NATURE BIOMEDICAL ENGINEERING, 2020
Human
Pancreas
Pancreatic Cancer
3.29K
Spots
15.5K
Genes
10
ROIs
Visium
2D
RNA
NATURE BIOTECHNOLOGY, 2020
Mouse
Brain
Normal
34.1K
Spots
19.3K
Genes
75
ROIs
Visium
2D
RNA
Cell Type
SCIENCE ADVANCES, 2020
Human
Tonsil
Normal
134K
Cells
14
Markers
119
ROIs
CyCIF
2D
Protein
NATURE PROTOCOLS, 2019
Human
Lung-Mixed
Lung Cancer
167K
Cells
28
Markers
397
ROIs
CyCIF
2D
Protein
NATURE PROTOCOLS, 2019
Human
Tonsil
Normal
288K
Cells
26
Markers
221
ROIs
CyCIF
2D
Protein
NATURE PROTOCOLS, 2019
Human
Pancreas
Diabetes (Type 1 Diabetes)
1.78M
Cells
36
Markers
845
ROIs
IMC
2D
Protein
Cell Type
CELL METABOLISM, 2019
Human
Brain
Multiple sclerosis
20.4K
Cells
15
Markers
28
ROIs
IMC
2D
Protein
Cell Type
ELIFE, 2019
Human
Bone-U2-Cell
Osteosarcoma
1.37K
Cells
12.9K
Genes
3
ROIs
MERFISH
2D
RNA
PNAS, 2019
Mouse
Brain-Hippocampal
Normal
76.2K
Cells
98
Genes
28
ROIs
pciSeq
2D
RNA
Cell Type
NATURE METHODS, 2019
Mouse
Brain-Olfactory Bulb
Normal
2.05K
Cells
10K
Genes
7
ROIs
seqFISH
2D
RNA
Cell Type
NATURE, 2019
Mouse
Brain-Cortex
Normal
913
Cells
10K
Genes
8
ROIs
seqFISH
2D
RNA
Cell Type
NATURE, 2019
Mouse
Brain-Cerebellum
Normal
63.9K
Spots
6.16K
Genes
5
ROIs
Slide-seq
2D
RNA
SCIENCE, 2019
Human
Heart
Normal
3.11K
Spots
22.2K
Genes
19
ROIs
Visium
2D
RNA
CELL, 2019
Human
Heart
Normal
3.66K
Spots
6.01K
Genes
4
ROIs
Visium
2D
RNA
NATURE COMMS, 2019
Human
Spinal Cord
Amyotrophic lateral sclerosis
64.3K
Spots
20.4K
Genes
80
ROIs
Visium
2D
RNA
SCIENCE, 2019
Mouse
Spinal Cord
Amyotrophic lateral sclerosis
84.4K
Spots
19.6K
Genes
348
ROIs
Visium
2D
RNA
SCIENCE, 2019
Human
Joint
Arthritic joint
6.24K
Spots
15.8K
Genes
18
ROIs
Visium
2D
RNA
SCIENTIFIC REPORTS, 2019
Mouse
Spleen
Systemic Autoimmune (Lupus)
701K
Cells
29
Markers
9
ROIs
CODEX
2D
Protein
Cell Type
CELL, 2018
Human
Pancreas
Pancreatic Cancer
158K
Cells
24
Markers
82
ROIs
CyCIF
2D
Protein
ELIFE, 2018
Human
Mixed
Cancer (TMA mix of various cancers)
180K
Cells
24
Markers
39
ROIs
CyCIF
2D
Protein
ELIFE, 2018
Human
Brain
Glioblastoma
349K
Cells
29
Markers
138
ROIs
CyCIF
2D
Protein
ELIFE, 2018
Mouse
Brain-Hypothalamic Preoptic
Normal
73.7K
Cells
161
Genes
1
ROI
MERFISH
3D
RNA
Cell Type
SCIENCE, 2018
Human
Breast
Breast Cancer (Triple negative breast cancer)
198K
Cells
39
Markers
40
ROIs
MIBI
2D
Protein
Cell Type
CELL, 2018
Mouse
Brain-Somatosensory cortex
Normal
4.84K
Cells
33
Genes
11
ROIs
osmFISH
2D
RNA
Cell Type
NATURE METHODS, 2018
Mouse
Brain-Medial Prefrontal Cortex
Normal
5.04K
Cells
166
Genes
4
ROIs
STARmap
2D
RNA
Cell Type
SCIENCE, 2018
Mouse
Brain-Visual Cortex
Normal
32.8K
Cells
28
Genes
1
ROI
STARmap
3D
RNA
SCIENCE, 2018
Human
Lymph Node
Cutaneous malignant melanoma (Stage 3)
2.34K
Spots
16.6K
Genes
8
ROIs
Visium
2D
RNA
CANCER RESEARCH, 2018
Human
Prostate
Prostate Cancer
5.86K
Spots
17.4K
Genes
12
ROIs
Visium
2D
RNA
NATURE COMMS, 2018
Human
Heart
Normal
1.89K
Spots
13.5K
Genes
10
ROIs
Visium
2D
RNA
SCIENTIFIC REPORTS, 2017
Mouse
Brain-Hippocampus
Normal
3.58K
Cells
249
Genes
30
ROIs
seqFISH
2D
RNA
NEURON, 2016